1H7W

DIHYDROPYRIMIDINE DEHYDROGENASE (DPD) FROM PIG

Structural Biology Knowledgebase: 1H7W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1H7W

Classification: ELECTRON TRANSFER

Total Structure Weight: 457009.88

Macromolecule Entities
Molecule Chains Length Organism Details
DIHYDROPYRIMIDINE DEHYDROGENASE A, B, C, D 1025 Sus scrofa EC#: 1.3.1.2 IUBMB
Mutation: G60D
Gene Name(s): DPYD Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FMN
Query on FMN

A, B, C, D FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

A, B, C, D IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.174
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.95 α = 90.00
b = 159.29 β = 96.04
c = 163.57 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-01-19
  • Released Date: 2001-02-23
  • Deposition author(s): Dobritzsch, D., Schneider, G., Schnackerz, K.D., Lindqvist, Y.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4