1H7R

SCHIFF-BASE COMPLEX OF YEAST 5-AMINOLAEVULINIC ACID DEHYDRATASE WITH SUCCINYLACETONE AT 2.0 A RESOLUTION.

Structural Biology Knowledgebase: 1H7R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1H7R

Classification: DEHYDRATASE

Total Structure Weight: 38009.04

Macromolecule Entities
Molecule Chains Length Organism Details
5-AMINOLAEVULINIC ACID DEHYDRATASE A 342 Saccharomyces cerevisiae EC#: 4.2.1.24 IUBMB
Details: SCHIFF-BASE LINK BETWEEN SUCCINYLACETONE INHIBITOR (HET GROUP SHU A1343) AND LYSINE 263.
Gene Name(s): HEM2 YGL040C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SHU
Query on SHU

A 4,6-DIOXOHEPTANOIC ACID
SUCCINYLACETONE (Synonym)
C7 H10 O4
WYEPBHZLDUPIOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.239
  • Space Group: I 4 2 2

Unit Cell:

Length (Å) Angle (°)
a = 103.10 α = 90.00
b = 103.10 β = 90.00
c = 168.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-07-09
  • Released Date: 2001-07-12
  • Deposition author(s): Erskine, P.T., Newbold, R., Brindley, A.A., Wood, S.P., Shoolingin-Jordan, P.M., Warren, M.J., Cooper, J.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4