1H6H

STRUCTURE OF THE PX DOMAIN FROM P40PHOX BOUND TO PHOSPHATIDYLINOSITOL 3-PHOSPHATE

Structural Biology Knowledgebase: 1H6H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1H6H

Classification: PX DOMAIN

Total Structure Weight: 16959.26

Macromolecule Entities
Molecule Chains Length Organism Details
NEUTROPHIL CYTOSOL FACTOR 4 A 143 Homo sapiens Fragment: PX DOMAIN RESIDUES 2-144
Gene Name(s): NCF4 Gene View SH3PXD4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PIB
Query on PIB

A 2-(BUTANOYLOXY)-1-{[(HYDROXY{[2,3,4,6-TETRAHYDROXY- 5-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL)OXY]METHYL}ETHYL BUTANOATE
3-O-PHOSPHO,,2-DI-O-BUTANOYLGLYCERYL (Synonym)
C17 H32 O16 P2
NKJZZWLREOAJGO-HODIZBBFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PIB N/A in BindingDB
Kd: 5000 nM  BindingMOAD
Kd: 5000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.196
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 96.76 α = 90.00
b = 33.64 β = 132.42
c = 76.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-15
  • Released Date: 2001-11-01
  • Deposition author(s): Karathanassis, D., Bravo, J., Pacold, M., Perisic, O., Williams, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4