1H62

Structure of Pentaerythritol tetranitrate reductase in complex with 1,4-androstadien-3,17-dione


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1H62

Classification: OXIDOREDUCTASE

Total Structure Weight: 40144.74

Macromolecule Entities
Molecule Chains Length Organism Details
PENTAERYTHRITOL TETRANITRATE REDUCTASE A 364 Enterobacter cloacae Details: NON-COVALENTLY BOUND FLAVIN MONONUCLEOTIDE
Gene Name(s): onr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ANB
Query on ANB

A ANDROSTA-1,4-DIENE-3,17-DIONE
C19 H24 O2
LUJVUUWNAPIQQI-QAGGRKNESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ANB N/A in BindingDB
Kd: 17000 nM  BindingMOAD
Kd: 17000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.194
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.71 α = 90.00
b = 69.01 β = 90.00
c = 88.71 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-04
  • Released Date: 2001-07-05
  • Deposition author(s): Barna, T.M., Moody, P.C.E.

Revision History

  • Version 1_0: 2001-07-05

    Type: Initial release

  • Version 1_1: 2012-10-31

    Type: Data collection, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance

  • Version 1_2: 2016-05-11

    Type: Structure summary