1H60

Structure of Pentaerythritol Tetranitrate Reductase in complex with progesterone


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 1H60

Classification: OXIDOREDUCTASE

Total Structure Weight: 40174.80

Macromolecule Entities
Molecule Chains Length Organism Details
PENTAERYTHRITOL TETRANITRATE REDUCTASE A 364 Enterobacter cloacae Details: NON-COVALENTLY BOUND FLAVIN MONONUCLEOTIDE
Gene Name(s): onr
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
STR
Query on STR

A PROGESTERONE
C21 H30 O2
RJKFOVLPORLFTN-LEKSSAKUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
STR N/A in BindingDB
Kd: 20000 nM  BindingMOAD
Kd: 20000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.182
  • R-Value Work: 0.172
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 56.69 α = 90.00
b = 68.67 β = 90.00
c = 88.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-06-04
  • Released Date: 2001-07-05
  • Deposition author(s): Barna, T.M., Moody, P.C.E.

Revision History

  • 2012-10-31
    Type: Data collection, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Structure summary, Version format compliance