1H5T

THYMIDYLYLTRANSFERASE COMPLEXED WITH THYMIDYLYLDIPHOSPHATE-GLUCOSE

Structural Biology Knowledgebase: 1H5T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 1H5T

Classification: TRANSFERASE

Total Structure Weight: 134847.97

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE A, C, D 293 Escherichia coli EC#: 2.7.7.24 IUBMB
Gene Name(s): rfbA rmlA rmlA1 b2039 JW2024
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE B 293 Escherichia coli EC#: 2.7.7.24 IUBMB
Mutation: M217L, M288Q
Gene Name(s): rfbA rmlA rmlA1 b2039 JW2024

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DAU
Query on DAU

A, B, C, D 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE
C16 H26 N2 O16 P2
YSYKRGRSMLTJNL-URARBOGNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TYD
Query on TYD

A, B, C, D THYMIDINE-5'-DIPHOSPHATE
C10 H16 N2 O11 P2
UJLXYODCHAELLY-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.174
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 72.81 α = 90.00
b = 119.49 β = 112.67
c = 81.17 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-25
  • Released Date: 2001-11-23
  • Deposition author(s): Rosano, C., Zuccotti, S., Bolognesi, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4