1H5R

THYMIDYLYLTRANSFERASE COMPLEXED WITH THIMIDINE AND GLUCOSE-1-PHOSPATE

Structural Biology Knowledgebase: 1H5R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.173

Literature

Macromolecules
Sequence Display for 1H5R

Classification: TRANSFERASE

Total Structure Weight: 134344.50

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE A, C, D 293 Escherichia coli EC#: 2.7.7.24 IUBMB
Gene Name(s): rfbA rmlA rmlA1 b2039 JW2024
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE B 293 Escherichia coli EC#: 2.7.7.24 IUBMB
Mutation: M217L, M288Q
Gene Name(s): rfbA rmlA rmlA1 b2039 JW2024

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
G1P
Query on G1P

A, B, C, D ALPHA-D-GLUCOSE-1-PHOSPHATE
C6 H13 O9 P
HXXFSFRBOHSIMQ-VFUOTHLCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
THM
Query on THM

A, B, C, D THYMIDINE
DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE (Synonym)
C10 H14 N2 O5
IQFYYKKMVGJFEH-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.173
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 72.81 α = 90.00
b = 118.96 β = 112.60
c = 80.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-05-25
  • Released Date: 2001-11-23
  • Deposition author(s): Rosano, C., Zuccotti, S., Bolognesi, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4