1H3W

CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT,GLYCOFORM (G2F)2, SG C2221

Structural Biology Knowledgebase: 1H3W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.279

Literature

Macromolecules
Sequence Display for 1H3W

Classification: IMMUNE SYSTEM

Total Structure Weight: 26224.76

Macromolecule Entities
Molecule Chains Length Organism Details
IG GAMMA-1 CHAIN C REGION M 223 Homo sapiens Fragment: CH2, CH3, RESIDUES 225-447
Gene Name(s): IGHG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

M N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

M BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUC
Query on FUC

M ALPHA-L-FUCOSE
C6 H12 O5
SHZGCJCMOBCMKK-SXUWKVJYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.320
  • R-Value Work: 0.279
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.55 α = 90.00
b = 149.25 β = 90.00
c = 75.75 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-19
  • Released Date: 2003-01-23
  • Deposition author(s): Krapp, S., Mimura, Y., Jefferis, R., Huber, R., Sondermann, P.

Revision History

  • 2011-09-21
    Type: Advisory | Details: CAVEAT
  • 2011-09-21
    Type: Geometry validation | Details: REMARK 500
  • 2011-09-21
    Type: Version format compliance | Details: REMARK 4
  • 2011-09-21
    Type: Refinement description | Details: REMARK 3
  • 2011-09-21
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-09-21
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM,HET
  • 2011-09-21
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-09-21
    Type: Linkage | Details: LINK
  • 2011-09-21
    Type: Function and keywords | Details: KEYWDS
  • 2011-09-21
    Type: Other | Details: HEADER,REMARK 525,REMARK 280,REMARK 480
  • 2011-09-21
    Type: Atom nomenclature | Details: HETATM