1H3T

CRYSTAL STRUCTURE OF THE HUMAN IGG1 FC-FRAGMENT,GLYCOFORM (MN2F)2

Structural Biology Knowledgebase: 1H3T SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.280

Literature

Macromolecules
Sequence Display for 1H3T

Classification: IMMUNE SYSTEM

Total Structure Weight: 51166.31

Macromolecule Entities
Molecule Chains Length Organism Details
IG GAMMA-1 CHAIN C REGION A, B 223 Homo sapiens Fragment: CH2, CH3, RESIDUES 225-447
Gene Name(s): IGHG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FUL
Query on FUL

A BETA-L-FUCOSE
6-DEOXY-BETA-L-GALACTOSE (Synonym)
C6 H12 O5
SHZGCJCMOBCMKK-KGJVWPDLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.309
  • R-Value Work: 0.280
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.57 α = 90.00
b = 80.78 β = 90.00
c = 139.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-19
  • Released Date: 2003-01-23
  • Deposition author(s): Krapp, S., Mimura, Y., Jefferis, R., Huber, R., Sondermann, P.

Revision History

  • 2011-10-12
    Type: Refinement description | Details: REMARK 3
  • 2011-10-12
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-10-12
    Type: Non-polymer description | Details: HETSYN,FORMUL,HETNAM,HET
  • 2011-10-12
    Type: Geometry validation | Details: REMARK 500
  • 2011-10-12
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-12
    Type: Function and keywords | Details: KEYWDS
  • 2011-10-12
    Type: Other | Details: HEADER,REMARK 525,REMARK 280
  • 2011-10-12
    Type: Atom nomenclature | Details: HETATM
  • 2011-10-12
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-10-12
    Type: Linkage | Details: LINK