1H3M

Structure of 4-diphosphocytidyl-2C-methyl-D-erythritol synthetase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.237

Literature

Macromolecules
Sequence Display for 1H3M

Classification: TRANSFERASE

Total Structure Weight: 51621.64

Macromolecule Entities
Molecule Chains Length Organism Details
2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE A, B 235 Escherichia coli EC#: 2.7.7.60 IUBMB
Mutation: A91T
Gene Name(s): ispD ygbP b2747 JW2717
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
N2P
Query on N2P

A PENTANE-1,5-DIAMINE
C5 H14 N2
VHRGRCVQAFMJIZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.333
  • R-Value Work: 0.237
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 73.60 α = 90.00
b = 73.60 β = 90.00
c = 175.56 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-10
  • Released Date: 2003-08-01
  • Deposition author(s): Kemp, L.E., Bond, C.S., Hunter, W.N.

Revision History

  • Version 1_0: 2003-08-01

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance