1H3J

STRUCTURE OF RECOMBINANT COPRINUS CINEREUS PEROXIDASE DETERMINED TO 2.0 A

Structural Biology Knowledgebase: 1H3J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1H3J

Classification: OXIDOREDUCTASE

Total Structure Weight: 73642.49

Macromolecule Entities
Molecule Chains Length Organism Details
PEROXIDASE A, B 342 Coprinopsis cinerea EC#: 1.11.1.7 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 22-363
Details: N-LINKED GLYCOSYLATION SITE AT ASN142 O-LINKED GLYCOSYLATION SITE AT SER338
Gene Name(s): CIP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
HSO
Query on HSO
A, B L-PEPTIDE LINKING C6 H12 N3 O HIS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.186
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 127.18 α = 90.00
b = 75.53 β = 90.00
c = 76.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-09-05
  • Released Date: 2003-06-12
  • Deposition author(s): Petersen, J.F.W., Houborg, K., Harris, P., Larsen, S.

Revision History

  • 2011-10-19
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-10-19
    Type: Geometry validation | Details: REMARK 500
  • 2011-10-19
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-19
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-10-19
    Type: Other | Details: REMARK 525,REMARK 280
  • 2011-10-19
    Type: Binding sites and description | Details: REMARK 800,SITE