1H2Y

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, Y473F MUTANT WITH COVALENTLY BOUND INHIBITOR Z-PRO-PROLINAL

Structural Biology Knowledgebase: 1H2Y SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 1H2Y

Classification: HYDROLASE

Total Structure Weight: 81639.98

Macromolecule Entities
Molecule Chains Length Organism Details
PROLYL ENDOPEPTIDASE A 710 Sus scrofa EC#: 3.4.21.26 IUBMB
Mutation: Y473F
Details: ENGINEERED MUTATION TYR 473 PHE
Gene Name(s): PREP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZPR
Query on ZPR

A N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL
Z-PRO-PROLINAL (Synonym)
C18 H22 N2 O4
ORZXYSPOAVJYRU-HOTGVXAUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ZPR IC50: 1.1 - 54 nM (95 - 97) BindingDB
Ki: 0.21 - 4.3 nM (95 - 97) BindingDB

N/A in BindingMoad
N/A in PDBbind
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000692
Query on PRD_000692
A Z-PRO-PROLINAL Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.194
  • R-Value Work: 0.172
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 70.80 α = 90.00
b = 99.60 β = 90.00
c = 110.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-20
  • Released Date: 2002-11-11
  • Deposition author(s): Rea, D., Fulop, V.

Revision History

  • 2013-03-06
    Type: Other | Details: Add PRD info
  • 2011-09-14
    Type: Source and taxonomy | Details: SOURCE
  • 2011-09-14
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-09-14
    Type: Non-polymer description | Details: FORMUL,HETSYN
  • 2011-09-14
    Type: Version format compliance | Details: REMARK 4