1H2D

EBOLA VIRUS MATRIX PROTEIN VP40 N-TERMINAL DOMAIN IN COMPLEX WITH RNA (LOW-RESOLUTION VP40[31-212] VARIANT).

Structural Biology Knowledgebase: 1H2D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.305

Literature

Macromolecules
Sequence Display for 1H2D

Classification: VIRUS / VIRAL PROTEIN

Total Structure Weight: 41253.27


Macromolecule Entities
Molecule Chains Length Organism Details
MATRIX PROTEIN VP40 A, B 182 Ebola virus sp. Fragment: N-TERMINAL DOMAIN, RESIDUES 31-212
Details: VP40[31-212] VARIANT
Gene Name(s): VP40
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*UP*GP*AP)-3' R, S 3 Escherichia coli RIBONUCLEOTIDE

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.329
  • R-Value Work: 0.305
  • Space Group: P 62 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 79.61 α = 90.00
b = 79.61 β = 90.00
c = 239.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-08-06
  • Released Date: 2003-04-10
  • Deposition author(s): Gomis-Ruth, F.X., Dessen, A., Bracher, A., Klenk, H.D., Weissenhorn, W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4