1H1O

ACIDITHIOBACILLUS FERROOXIDANS CYTOCHROME C4 STRUCTURE SUPPORTS A COMPLEX-INDUCED TUNING OF ELECTRON TRANSFER

Structural Biology Knowledgebase: 1H1O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.239

Literature

Macromolecules
Sequence Display for 1H1O

Classification: ELECTRON TRANSPORT

Total Structure Weight: 43015.97

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C-552 A, B 183 Acidithiobacillus ferrooxidans Gene Name(s): cyc1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.13 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.239
  • Space Group: P 64 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 100.05 α = 90.00
b = 100.05 β = 90.00
c = 149.67 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-19
  • Released Date: 2003-07-17
  • Deposition author(s): Abergel, C., Nitschke, W., Malarte, G., Bruschi, M., Claverie, J.-M., Guidici-Orticoni, M.-T.

Revision History

  • 2011-10-12
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-10-12
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-12
    Type: Non-polymer description | Details: FORMUL,HETSYN
  • 2011-10-12
    Type: Other | Details: REMARK 525
  • 2011-10-12
    Type: Geometry validation | Details: REMARK 500