1H15

X-ray crystal structure of HLA-DRA1*0101/DRB5*0101 complexed with a peptide from Epstein Barr Virus DNA polymerase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.256

Literature

Macromolecules
Sequence Display for 1H15

Classification: IMMUNE SYSTEM / TRANSFERASE

Total Structure Weight: 91138.70

Macromolecule Entities
Molecule Chains Length Organism Details
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN A, D 182 Homo sapiens Fragment: ALPHA CHAIN, RESIDUES 26-207
Gene Name(s): HLA-DRA Gene View HLA-DRA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN B, E 190 Homo sapiens Fragment: BETA CHAIN, RESIDUES 30-219
Gene Name(s): HLA-DRB5 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DNA POLYMERASE C, F 14 Human gammaherpesvirus 4 EC#: 2.7.7.7 IUBMB
Fragment: RESIDUES 628-641
Gene Name(s): BALF5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, D N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.1 Å
  • R-Value Free: 0.310
  • R-Value Work: 0.256
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 179.24 α = 90.00
b = 179.24 β = 90.00
c = 92.88 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-07-02
  • Released Date: 2002-10-03
  • Deposition author(s): Lang, H., Jacobsen, H., Ikemizu, S., Andersson, C., Harlos, K., Madsen, L., Hjorth, P., Sondergaard, L., Svejgaard, A., Wucherpfennig, K., Stuart, D.I., Bell, J.I., Jones, E.Y., Fugger, L.

Revision History

  • Version 1_0: 2002-10-03

    Type: Initial release

  • Version 1_1: 2011-09-28

    Type: Advisory, Atomic model, Derived calculations, Non-polymer description, Other, Refinement description, Version format compliance

  • Version 1_2: 2012-06-27

    Type: Other