1GZH

Crystal structure of the BRCT domains of human 53BP1 bound to the p53 tumor supressor

Structural Biology Knowledgebase: 1GZH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.238

Literature

Macromolecules
Sequence Display for 1GZH

Classification: GENE REGULATION

Total Structure Weight: 101412.26

Macromolecule Entities
Molecule Chains Length Organism Details
CELLULAR TUMOR ANTIGEN P53 A 198 Homo sapiens Fragment: DNA BINDING REGION, RESIDUES 95-292
Mutation: D228E
Gene Name(s): TP53 Gene View P53
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
TUMOR SUPPRESSOR P53-BINDING PROTEIN 1 B, D 249 Homo sapiens Fragment: BRCT TANDEM REPEAT, RESIDUES 1724-1972
Gene Name(s): TP53BP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CELLULAR TUMOR ANTIGEN P53 C 198 Homo sapiens Fragment: DNA BINDING REGION, RESIDUES 95-292
Gene Name(s): TP53 Gene View P53

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, C ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.238
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.52 α = 90.00
b = 94.57 β = 90.00
c = 136.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-05-22
  • Released Date: 2002-06-27
  • Deposition author(s): Derbyshire, D.J., Doherty, A.J.

Revision History

  • 2014-02-05
    Type: Refinement description | Details: REMARK 3
  • 2014-02-05
    Type: Non-polymer description | Details: FORMUL
  • 2014-02-05
    Type: Other | Details: REMARK 525
  • 2014-02-05
    Type: Version format compliance | Details: REMARK 4
  • 2014-02-05
    Type: Polymer description | Details: REMARK 400
  • 2014-02-05
    Type: Citation | Details: REMARK 1
  • 2014-02-05
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2014-02-05
    Type: Geometry validation | Details: REMARK 500