1GYM

PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C IN COMPLEX WITH GLUCOSAMINE-(ALPHA-1-6)-MYO-INOSITOL

Structural Biology Knowledgebase: 1GYM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 1GYM

Classification: HYDROLASE (PHOSPHORIC DIESTER)

Total Structure Weight: 34910.29

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHATIDYLINOSITOL-SPECIFIC PHOSPHOLIPASE C A 298 Bacillus cereus EC#: 4.6.1.13 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MYG
Query on MYG

A GLUCOSAMINYL-(ALPHA-6)-D-MYO-INOSITOL
C12 H23 N O10
HEPUIGACZYVUCD-YZRQSVRMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
MYG N/A in BindingDB
IC50: 2000000 nM  BindingMOAD
IC50: 2000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.272
  • R-Value Work: 0.178
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 45.20 α = 90.00
b = 46.50 β = 90.00
c = 161.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-05-02
  • Released Date: 1996-11-08
  • Deposition author(s): Heinz, D.W., Ryan, M., Smith, M.P., Weaver, L.H., Keana, J.F.W., Griffith, O.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4