1GX4

ALPHA-,1,3 GALACTOSYLTRANSFERASE - N-ACETYL LACTOSAMINE COMPLEX

Structural Biology Knowledgebase: 1GX4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Observed: 0.149

Literature

Macromolecules
Sequence Display for 1GX4

Classification: TRANSFERASE

Total Structure Weight: 70234.24

Macromolecule Entities
Molecule Chains Length Organism Details
N-ACETYLLACTOSAMINIDE ALPHA-1,3-GALACTOSYLTRANSFERASE A, B 289 Bos taurus EC#: 2.4.1.87 IUBMB
Fragment: CATALYTIC DOMAIN RESIDUES 80-368
Gene Name(s): GGTA1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
UDP
Query on UDP

A, B URIDINE-5'-DIPHOSPHATE
C9 H14 N2 O12 P2
XCCTYIAWTASOJW-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GAL
Query on GAL

A, B BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
UDP N/A in BindingDB
Kd: 53000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.46 Å
  • R-Value Observed: 0.149
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.63 α = 90.00
b = 95.25 β = 99.09
c = 95.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-27
  • Released Date: 2003-03-27
  • Deposition author(s): Boix, E., Zhang, Y., Swaminathan, G.J., Brew, K., Acharya, K.R.

Revision History

  • 2011-09-07
    Type: Polymer description | Details: COMPND
  • 2011-09-07
    Type: Source and taxonomy | Details: SOURCE
  • 2011-09-07
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2011-09-07
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-09-07
    Type: Geometry validation | Details: REMARK 500
  • 2011-09-07
    Type: Version format compliance | Details: REMARK 4
  • 2011-09-07
    Type: Citation | Details: REMARK 1
  • 2011-09-07
    Type: Other | Details: ANISOU,REMARK 525,REMARK 280
  • 2011-09-07
    Type: Atom nomenclature | Details: HETATM
  • 2011-09-07
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-09-07
    Type: Linkage | Details: CONECT