1GWF

Compound II structure of Micrococcus Lysodeikticus catalase

Structural Biology Knowledgebase: 1GWF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.141

Literature

Macromolecules
Sequence Display for 1GWF

Classification: OXIDOREDUCTASE

Total Structure Weight: 58082.05

Macromolecule Entities
Molecule Chains Length Organism Details
CATALASE A 503 Micrococcus luteus EC#: 1.11.1.6 IUBMB
Mutation: M503I
Gene Name(s): katA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
O
Query on O

A OXYGEN ATOM
O
XLYOFNOQVPJJNP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SME
Query on SME
A L-PEPTIDE LINKING C5 H11 N O3 S MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.141
  • Space Group: P 42 21 2

Unit Cell:

Length (Å) Angle (°)
a = 106.19 α = 90.00
b = 106.19 β = 90.00
c = 105.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-03-15
  • Released Date: 2002-04-26
  • Deposition author(s): Murshudov, G.N., Grebenko, A.I., Brannigan, J.A., Antson, A.A., Barynin, V.V., Dodson, G.G., Dauter, Z., Wilson, K.S., Melik-Adamyan, W.R.

Revision History

  • 2015-04-01
    Type: Secondary structure | Details: SHEET
  • 2015-04-01
    Type: Non-polymer description | Details: FORMUL
  • 2015-04-01
    Type: Biological assembly | Details: REMARK 350
  • 2015-04-01
    Type: Citation | Details: JRNL
  • 2015-04-01
    Type: Other | Details: REMARK 525,REMARK 280
  • 2015-04-01
    Type: Version format compliance | Details: REMARK 4