1GT5

Complexe of Bovine Odorant Binding Protein with benzophenone

Structural Biology Knowledgebase: 1GT5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1GT5

Classification: LIPOCALIN

Total Structure Weight: 37421.58

Macromolecule Entities
Molecule Chains Length Organism Details
ODORANT-BINDING PROTEIN A, B 159 Bos taurus Mutation: D154N
Details: BENZOPHENONE AS LIGAND
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BZQ
Query on BZQ

A, B DIPHENYLMETHANONE
BENZENE, BENZOYL-; BENZOPHENONE (8CI); BENZOYLBENZENE; DIPHENYL KETONE; KETONE, DIPHENYL; METHANONE, DIPHENYL- (9CI); PHENYL KETONE; WLN: RVR (Synonym)
C13 H10 O
RWCCWEUUXYIKHB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BZQ N/A in BindingDB
Kd: 800 nM  BindingMOAD
Kd: 800 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.08 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.188
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.59 α = 90.00
b = 65.21 β = 98.32
c = 42.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-10
  • Released Date: 2003-10-03
  • Deposition author(s): Vincent, F., Ramoni, R., Spinelli, S., Grolli, S., Conti, V., Cambillau, C., Tegoni, M.

Revision History

  • 2015-04-15
    Type: Non-polymer description | Details: FORMUL
  • 2015-04-15
    Type: Biological assembly | Details: REMARK 350
  • 2015-04-15
    Type: Citation | Details: JRNL
  • 2015-04-15
    Type: Other | Details: REMARK 525,REMARK 280
  • 2015-04-15
    Type: Version format compliance | Details: REMARK 4