1GT3

Complex of Bovine Odorant Binding Protein with dihydromyrcenol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.201

Literature

Macromolecules
Sequence Display for 1GT3

Classification: ODORANT BINDING PROTEIN

Total Structure Weight: 37625.71

Macromolecule Entities
Molecule Chains Length Organism Details
ODORANT-BINDING PROTEIN A, B 159 Bos taurus Mutation: D154N
Details: DIHYDROMYRCENOL AS LIGAND
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DHM
Query on DHM

A, B 2,6-DIMETHYL-7-OCTEN-2-OL
C10 H20 O
XSNQECSCDATQEL-VIFPVBQESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3OM
Query on 3OM

A, B (3S)-1-octen-3-ol
C8 H16 O
VSMOENVRRABVKN-MRVPVSSYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DHM N/A in BindingDB
Kd: 350 nM  BindingMOAD
Kd: 350 nM  PDBbind
3OM N/A in BindingDB
Kd: 1200 nM  BindingMOAD


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.201
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 55.59 α = 90.00
b = 65.21 β = 98.32
c = 42.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2002-01-10
  • Released Date: 2003-10-03
  • Deposition author(s): Vincent, F., Ramoni, R., Spinelli, S., Grolli, S., Conti, V., Cambillau, C., Tegoni, M.

Revision History

  • 2014-02-26
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary, Version format compliance