1GR3

STRUCTURE OF THE HUMAN COLLAGEN X NC1 TRIMER

Structural Biology Knowledgebase: 1GR3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 1GR3

Classification: COLLAGEN

Total Structure Weight: 18429.13

Macromolecule Entities
Molecule Chains Length Organism Details
COLLAGEN X A 160 Homo sapiens Fragment: NC1 DOMAIN, RESIDUES 521-680
Gene Name(s): COL10A1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CPS
Query on CPS

A 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1- PROPANESULFONATE
CHAPS (Synonym)
C32 H58 N2 O7 S
UMCMPZBLKLEWAF-BCTGSCMUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.186
  • Space Group: H 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 78.36 α = 90.00
b = 78.36 β = 90.00
c = 141.04 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-12-12
  • Released Date: 2002-02-14
  • Deposition author(s): Bogin, O., Kvansakul, M., Rom, E., Singer, J., Yayon, A., Hohenester, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4