1GPJ

GLUTAMYL-TRNA REDUCTASE FROM METHANOPYRUS KANDLERI

Structural Biology Knowledgebase: 1GPJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.212

Literature

Macromolecules
Sequence Display for 1GPJ

Classification: REDUCTASE

Total Structure Weight: 46073.53

Macromolecule Entities
Molecule Chains Length Organism Details
GLUTAMYL-TRNA REDUCTASE A 404 Methanopyrus kandleri EC#: 1.2.1 IUBMB
Fragment: WHOLE MOLECULE, RESIDUES 1-404
Mutation: C6S, C42S, C48S, C90S, C393S
Gene Name(s): hemA MK0200
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GMC
Query on GMC

A (2R,3R,4S,5S)-4-AMINO-2-[6-(DIMETHYLAMINO)- 9H-PURIN-9-YL]-5-(HYDROXYMETHYL)TETRAHYDRO- 3-FURANOL
6N-DIMETHYL-3'-DEOXY-AMINO-ADENOSINE (Synonym)
C12 H18 N6 O3
RYSMHWILUNYBFW-GRIPGOBMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

A CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLU
Query on GLU

A GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.212
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 78.27 α = 90.00
b = 98.65 β = 90.00
c = 68.61 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-11-05
  • Released Date: 2002-01-04
  • Deposition author(s): Moser, J., Schubert, W.-D., Beier, V., Bringemeier, I., Jahn, D., Heinz, D.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4