Macromolecules
Sequence Display for 1GMY

Classification: HYDROLASE / INHIBITOR

Total Structure Weight: 87811.99

Macromolecule Entities
Molecule Chains Length Organism Details
CATHEPSIN B A, B, C 261 Homo sapiens EC#: 3.4.22.1 IUBMB
Fragment: PROTEASE DOMAIN, RESIDUES 80-333
Gene Name(s): CTSB Gene View CPSB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DFA
Query on DFA

A, B, C DIPHENYLACETIC ACID
C14 H12 O2
PYHXGXCGESYPCW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
APD
Query on APD

A, B, C 3-METHYLPHENYLALANINE
C10 H13 N O2
JZRBSTONIYRNRI-VIFPVBQESA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AEM
Query on AEM

A, B, C 2-AMINOETHANIMIDIC ACID
C2 H6 N2
AXQVKDQRBAXYBP-HNQUOIGGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.161
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 103.90 α = 90.00
b = 103.90 β = 90.00
c = 125.60 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-09-25
  • Released Date: 2002-09-19
  • Deposition author(s): Greenspan, P.D., Clark, K.L., Tommasi, R.A., Cowen, S.D., McQuire, L.W., Farley, D.L., van Duzer, J.H., Goldberg, R.L., Zhou, H., Du, Z., Fitt, J.J., Coppa, D.E., Fang, Z., Macchia, W., Zhu, L., Capparelli, M.P., Goldstein, R., Wigg, A.M., Doughty, J.R., Bohacek, R.S., Knap, A.K.

Revision History

  • Version 1_0: 2002-09-19

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-07-05

    Type: Data collection