1GL4

NIDOGEN-1 G2/PERLECAN IG3 COMPLEX

Structural Biology Knowledgebase: 1GL4 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.217

Literature

Macromolecules
Sequence Display for 1GL4

Classification: BASEMENT MEMBRANE

Total Structure Weight: 42217.01

Macromolecule Entities
Molecule Chains Length Organism Details
NIDOGEN-1 A 285 Mus musculus EC#: 2.7.11.27 IUBMB
Fragment: G2 RESIDUES 385-665
Gene Name(s): Nid1 Ent
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
BASEMENT MEMBRANE-SPECIFIC HEPARAN SULFATE PROTEOGLYCAN CORE PROTEIN B 98 Mus musculus Fragment: IG3 RESIDUES 1765-1858
Details: VECTOR-DERIVED N-TERMINAL APLA
Gene Name(s): Hspg2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

B 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.217
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.92 α = 90.00
b = 72.30 β = 90.00
c = 103.93 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-23
  • Released Date: 2001-11-28
  • Deposition author(s): Kvansakul, M., Hopf, M., Ries, A., Timpl, R., Hohenester, E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4