1GJV

Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) complxed with ATP-gamma-S

Structural Biology Knowledgebase: 1GJV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.218

Literature

Macromolecules
Sequence Display for 1GJV

Classification: TRANSFERASE

Total Structure Weight: 45025.99

Macromolecule Entities
Molecule Chains Length Organism Details
[3-METHYL-2-OXOBUTANOATE DEHYDROGENASE [LIPOAMIDE]] KINASE A 388 Rattus norvegicus EC#: 2.7.11.4 IUBMB
Details: C-TERMINAL HIS6-TAG
Gene Name(s): Bckdk
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AGS
Query on AGS

A PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
ATP-GAMMA-S; ADENOSINE 5'-(3-THIOTRIPHOSPHATE); ADENOSINE 5'- (GAMMA-THIOTRIPHOSPHATE); ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE (Synonym)
C10 H16 N5 O12 P3 S
NLTUCYMLOPLUHL-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.218
  • Space Group: P 42 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 127.72 α = 90.00
b = 127.72 β = 90.00
c = 74.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-08-03
  • Released Date: 2001-10-11
  • Deposition author(s): Machius, M., Chuang, J.L., Wynn, M.R., Tomchick, D.R., Chuang, D.T.

Revision History

  • 2013-01-30
    Type: Citation | Details: JRNL
  • 2013-01-30
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2013-01-30
    Type: Non-polymer description | Details: HETSYN,FORMUL,REMARK 620,HETNAM,HET
  • 2013-01-30
    Type: Version format compliance | Details: REMARK 4
  • 2013-01-30
    Type: Entry authorship | Details: AUTHOR
  • 2013-01-30
    Type: Other | Details: REMARK 465,TER,REMARK 470,REMARK 525
  • 2013-01-30
    Type: Atom nomenclature | Details: ATOM,HETATM
  • 2013-01-30
    Type: Linkage | Details: LINK