1GJ8

ENGINEERING INHIBITORS HIGHLY SELECTIVE FOR THE S1 SITES OF SER190 TRYPSIN-LIKE SERINE PROTEASE DRUG TARGETS

Structural Biology Knowledgebase: 1GJ8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1GJ8

Classification: BLOOD CLOTTING hydrolase

Total Structure Weight: 31870.42

Macromolecule Entities
Molecule Chains Length Organism Details
UROKINASE-TYPE PLASMINOGEN ACTIVATOR A 23 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: SHORT CHAIN
Gene Name(s): PLAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
UROKINASE-TYPE PLASMINOGEN ACTIVATOR B 253 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: CATALYTIC DOMAIN
Mutation: N145A
Gene Name(s): PLAU Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
133
Query on 133

B 6-FLUORO-2-(2-HYDROXY-3-ISOBUTOXY-PHENYL)- 1H-BENZOIMIDAZOLE-5-CARBOXAMIDINE
C18 H19 F N4 O2
NSUDDASMRZSVON-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CIT
Query on CIT

B CITRIC ACID
C6 H8 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
133 N/A in BindingDB
Ki: 110 nM  BindingMOAD
Ki: 110 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.64 Å
  • R-Value Free: 0.221
  • R-Value Work: 0.188
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 81.77 α = 90.00
b = 50.02 β = 113.76
c = 66.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2001-04-27
  • Released Date: 2002-04-27
  • Deposition author(s): Katz, B.A., Sprengeler, P.A., Luong, C., Verner, E., Spencer, J.R., Breitenbucher, J.G., Hui, H., McGee, D., Allen, D., Martelli, A., Mackman, R.L.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom occupancy | Details: Restore author's atom occupancy