1GIC

CONCANAVALIN A COMPLEXED WITH METHYL ALPHA-D-GLUCOPYRANOSIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.170

Literature

Macromolecules
Sequence Display for 1GIC

Classification: LECTIN

Total Structure Weight: 51823.55

Macromolecule Entities
Molecule Chains Length Organism Details
CONCANAVALIN A A, B 237 Canavalia ensiformis Mutation: E151D, R155E
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GYP
Query on GYP

A, B METHYL-ALPHA-D-GLUCOPYRANOSIDE
ALPHA-METHYL-D-GLUCOPYRANOSIDE (Synonym)
C7 H14 O6
HOVAGTYPODGVJG-ZFYZTMLRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.170
  • Space Group: I 21 3

Unit Cell:

Length (Å) Angle (°)
a = 167.80 α = 90.00
b = 167.80 β = 90.00
c = 167.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-08-08
  • Released Date: 1997-08-20
  • Deposition author(s): Bradbrook, G.M., Gleichmann, T., Harrop, S.J., Helliwell, J.R., Habash, J., Kalb(Gilboa), A.J., Tong, L., Wan, T.C.M., Yariv, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values