1GHG

CRYSTAL STRUCTURE OF VANCOMYCIN AGLYCON

Structural Biology Knowledgebase: 1GHG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Observed: 0.150

Literature

Macromolecules
Sequence Display for 1GHG

Classification: ANTIBIOTIC

Total Structure Weight: 4996.43

Macromolecule Entities
Molecule Chains Length Organism Details
VANCOMYCIN AGLYCON A, B, C, D 7 Amycolatopsis orientalis

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DMS
Query on DMS

C, D DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACY
Query on ACY

A, B, C, D ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000206
Query on PRD_000206
A, B, C, D VANCOMYCIN AGLYCON Oligopeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.98 Å
  • R-Value Observed: 0.150
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 29.48 α = 90.00
b = 29.48 β = 90.00
c = 74.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-12-13
  • Released Date: 2001-02-12
  • Deposition author(s): Kaplan, J., Korty, B.D., Axelsen, P.H., Loll, P.J.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-27
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-27
    Type: Linkage | Details: Linkage
  • 2011-07-27
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-27
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-27
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-27
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-27
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4