1GGY

HUMAN FACTOR XIII WITH YTTERBIUM BOUND IN THE ION SITE

Structural Biology Knowledgebase: 1GGY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 1GGY

Classification: TRANSFERASE

Total Structure Weight: 167853.55

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (COAGULATION FACTOR XIII) A, B 731 Homo sapiens EC#: 2.3.2.13 IUBMB
Fragment: FULL LENGTH
Mutation: Q651E
Details: YTTERBIUM SOAKED INTO CRYSTAL
Gene Name(s): F13A1 Gene View F13A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YB
Query on YB

A, B YTTERBIUM (III) ION
Yb
AWSFICBXMUKWSK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.281
  • R-Value Work: 0.188
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 101.06 α = 90.00
b = 72.39 β = 106.09
c = 135.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-23
  • Released Date: 1999-02-16
  • Deposition author(s): Fox, B.A., Yee, V.C., Pederson, L.C., Trong, I.L., Bishop, P.D., Stenkamp, R.E., Teller, D.C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values