1GG5

CRYSTAL STRUCTURE OF A COMPLEX OF HUMAN NAD[P]H-QUINONE OXIDOREDUCTASE AND A CHEMOTHERAPEUTIC DRUG (E09) AT 2.5 A RESOLUTION

Structural Biology Knowledgebase: 1GG5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1GG5

Classification: OXIDOREDUCTASE

Total Structure Weight: 127410.24

Macromolecule Entities
Molecule Chains Length Organism Details
NAD(P)H DEHYDROGENASE [QUINONE] 1 A, B, C, D 273 Homo sapiens EC#: 1.6.5.2 IUBMB
Gene Name(s): NQO1 Gene View DIA4 NMOR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B, C, D FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
E09
Query on E09

A, B, C, D 3-HYDROXYMETHYL-5-AZIRIDINYL-1METHYL-2-[1H- INDOLE-4,7-DIONE]-PROPANOL
C15 H18 N2 O4
JCCDRCRHGKFTQS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.279
  • R-Value Work: 0.200
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 56.73 α = 76.42
b = 55.45 β = 77.22
c = 97.21 γ = 86.45

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-12
  • Released Date: 2001-09-12
  • Deposition author(s): Faig, M., Bianchet, M.A., Winski, S., Hargreaves, R., Moody, C.J., Hudnott, A.R., Ross, D., Amzel, L.M.

Revision History

  • 2014-11-12
    Type: Function and keywords | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4