1GFM

OMPF PORIN (MUTANT D113G)

Structural Biology Knowledgebase: 1GFM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Observed: 0.186

Literature

Macromolecules
Sequence Display for 1GFM

Classification: TRANSMEMBRANE PROTEIN

Total Structure Weight: 40733.92

Macromolecule Entities
Molecule Chains Length Organism Details
MATRIX PORIN OUTER MEMBRANE PROTEIN F A 340 Escherichia coli Mutation: D113G
Gene Name(s): ompF cmlB coa cry tolF b0929 JW0912
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: BETA-BARREL

Subgroup Name: Beta-Barrel Membrane Proteins: Porins and Relatives

Protein Name: OmpF Porin


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C8E
Query on C8E

A (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE
C16 H34 O5
FEOZZFHAVXYAMB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Observed: 0.186
  • Space Group: P 3 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 118.30 α = 90.00
b = 118.30 β = 90.00
c = 52.80 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-05-08
  • Released Date: 1996-12-07
  • Deposition author(s): Lou, K.-L., Schirmer, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values