1GEE

Crystal structure of glucose dehydrogenase mutant Q252L complexed with NAD+

Structural Biology Knowledgebase: 1GEE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1GEE

Classification: OXIDOREDUCTASE

Total Structure Weight: 115046.40

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSE 1-DEHYDROGENASE A, B, E, F 261 Bacillus megaterium EC#: 1.1.1.47 IUBMB
Mutation: Q252L
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, E, F NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.195
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 120.53 α = 90.00
b = 66.60 β = 93.14
c = 119.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-07
  • Released Date: 2003-08-12
  • Deposition author(s): Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values