1GDE

CRYSTAL STRUCTURE OF PYROCOCCUS PROTEIN A-1 E-FORM

Structural Biology Knowledgebase: 1GDE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 1GDE

Classification: TRANSFERASE

Total Structure Weight: 88710.92

Macromolecule Entities
Molecule Chains Length Organism Details
ASPARTATE AMINOTRANSFERASE A, B 389 Pyrococcus horikoshii EC#: 2.6.1 IUBMB
Gene Name(s): PH1371
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLU
Query on GLU

A GLUTAMIC ACID
C5 H9 N O4
WHUUTDBJXJRKMK-VKHMYHEASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.198
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 59.33 α = 90.00
b = 121.90 β = 90.00
c = 127.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-23
  • Released Date: 2001-09-23
  • Deposition author(s): Ura, H., Harata, K., Matsui, I., Kuramitsu, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update