1GCB

GAL6, YEAST BLEOMYCIN HYDROLASE DNA-BINDING PROTEASE (THIOL)

Structural Biology Knowledgebase: 1GCB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1GCB

Classification: DNA-BINDING PROTEIN

Total Structure Weight: 53335.63

Macromolecule Entities
Molecule Chains Length Organism Details
GAL6 HG (EMTS) DERIVATIVE A 454 Saccharomyces cerevisiae EC#: 3.4.22.40 IUBMB
Gene Name(s): LAP3 Gene View BLH1 GAL6 YCP1 YNL239W N1118
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HG
Query on HG

A MERCURY (II) ION
Hg
BQPIGGFYSBELGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.274
  • R-Value Work: 0.209
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 151.15 α = 90.00
b = 151.15 β = 90.00
c = 89.88 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-07-18
  • Released Date: 1995-10-15
  • Deposition author(s): Joshua-Tor, L., Xu, H.E., Johnston, S.A., Rees, D.C.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4