1GAF

48G7 HYBRIDOMA LINE FAB COMPLEXED WITH HAPTEN 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.244

Literature

Macromolecules
Sequence Display for 1GAF

Classification: CATALYTIC ANTIBODY

Total Structure Weight: 46996.26

Macromolecule Entities
Molecule Chains Length Organism Details
CHIMERIC 48G7 FAB L 214 Homo sapiens Fragment: VARIABLE DOMAINS OF LIGHT AND HEAVY CHAINS AND CONSTANT DOMAINS OF LIGHT AND HEAVY CHAINS
Mutation: V15L, D17E, T20S, I21L, Q24R, D28E, N31G, N34G, Y36L, G41D, K42G, P44I, L46R, G50A, N53T, E55H, T56S, S60K, G66R, T69S, F71Y, I72S, F73L, Q79E, P80S, I83F, T85D, Q89L, D92A, N93S, L94Y, L96R, N177S
Details: BOTH FAB CHAINS ARE DERIVED FROM THE MATURE (HYBRIDOMA LINE) ANTIBODY. THE LIGHT CHAIN CONSISTS OF THE VJ VARIABLE DOMAIN FROM MOUSE AND THE C(KAPPA) CONSTANT REGION FROM HUMAN. THE HEAVY CHAIN CONSISTS OF THE VDJ VARIABLE DOMAIN FROM MOUSE AND THE C(H1) CONSTANT REGION FROM HUMAN
Gene Name(s): IGKC
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CHIMERIC 48G7 FAB H 217 Homo sapiens Fragment: VARIABLE DOMAINS OF LIGHT AND HEAVY CHAINS AND CONSTANT DOMAINS OF LIGHT AND HEAVY CHAINS
Details: BOTH FAB CHAINS ARE DERIVED FROM THE MATURE (HYBRIDOMA LINE) ANTIBODY. THE LIGHT CHAIN CONSISTS OF THE VJ VARIABLE DOMAIN FROM MOUSE AND THE C(KAPPA) CONSTANT REGION FROM HUMAN. THE HEAVY CHAIN CONSISTS OF THE VDJ VARIABLE DOMAIN FROM MOUSE AND THE C(H1) CONSTANT REGION FROM HUMAN
Gene Name(s): IGHG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NPE
Query on NPE

H 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID
C11 H13 N O7 P
XVVZSEXTAACTPS-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
NPE N/A in BindingDB
Kd: 10 nM  BindingMOAD
Kd: 10 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.307
  • R-Value Work: 0.244
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 140.26 α = 90.00
b = 44.85 β = 121.55
c = 85.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-02-06
  • Released Date: 1996-07-11
  • Deposition author(s): Wedemayer, G.J., Patten, P.A., Stevens, R.C., Schultz, P.G.

Revision History

  • 2008-03-03
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance