1G7V

CRYSTAL STRUCTURES OF KDO8P SYNTHASE IN ITS BINARY COMPLEXES WITH THE MECHANISM-BASED INHIBITOR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 1G7V

Classification: LYASE

Total Structure Weight: 31285.90

Macromolecule Entities
Molecule Chains Length Organism Details
2-DEHYDRO-3-DEOXYPHOSPHOOCTONATE ALDOLASE A 284 Escherichia coli EC#: 2.5.1.55 IUBMB
Gene Name(s): kdsA b1215 JW1206
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PAI
Query on PAI

A {[(2,2-DIHYDROXY-ETHYL)-(2,3,4,5-TETRAHYDROXY- 6-PHOSPHONOOXY-HEXYL)-AMINO]-METHYL}-PHOSPHONIC ACID
C9 H23 N O13 P2
ATILYNKCRYHYEP-SQEXRHODSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PAI N/A in BindingDB
Kd: 400 nM  BindingMOAD
Kd: 400 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.221
  • Space Group: I 2 3

Unit Cell:

Length (Å) Angle (°)
a = 117.60 α = 90.00
b = 117.60 β = 90.00
c = 117.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-14
  • Released Date: 2001-05-16
  • Deposition author(s): Asojo, O.A., Friedman, J.M., Belakhov, V., Shoham, Y., Adir, N., Baasov, T.

Revision History

  • Version 1_0: 2001-05-16

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Derived calculations, Version format compliance