1G6O

CRYSTAL STRUCTURE OF THE HELICOBACTER PYLORI ATPASE, HP0525, IN COMPLEX WITH ADP

Structural Biology Knowledgebase: 1G6O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.224

Literature

Macromolecules
Sequence Display for 1G6O

Classification: HYDROLASE

Total Structure Weight: 77214.19

Macromolecule Entities
Molecule Chains Length Organism Details
CAG-ALPHA A, B 330 Helicobacter pylori Mutation: M42M, M82M, M192M, M239M, M287M, M312M
Gene Name(s): cag-alfa cag-alpha cagAlpha virB11 AC785_03890 ACM25_02070 ACM37_01770 AEY53_03685 AM497_06540 AM498_02085 HP0525
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A, B ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

B DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.289
  • R-Value Work: 0.224
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 112.62 α = 90.00
b = 112.62 β = 90.00
c = 234.83 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-07
  • Released Date: 2001-01-24
  • Deposition author(s): Yeo, H.J., Savvides, S.N., Herr, A.B., Lanka, E., Waksman, G., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values