1G6K

Crystal structure of glucose dehydrogenase mutant E96A complexed with NAD+

Structural Biology Knowledgebase: 1G6K SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1G6K

Classification: OXIDOREDUCTASE

Total Structure Weight: 114874.14

Macromolecule Entities
Molecule Chains Length Organism Details
GLUCOSE 1-DEHYDROGENASE A, B, E, F 261 Bacillus megaterium EC#: 1.1.1.47 IUBMB
Mutation: E96A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, E, F NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.219
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 121.96 α = 90.00
b = 66.64 β = 93.44
c = 120.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-06
  • Released Date: 2003-08-12
  • Deposition author(s): Yamamoto, K., Kurisu, G., Kusunoki, M., Tabata, S., Urabe, I., Osaki, S.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4