1G5Q

EPID H67N COMPLEXED WITH SUBSTRATE PEPTIDE DSYTC

Structural Biology Knowledgebase: 1G5Q SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 1G5Q

Classification: OXIDOREDUCTASE

Total Structure Weight: 87704.66

Macromolecule Entities
Molecule Chains Length Organism Details
EPIDERMIN MODIFYING ENZYME EPID A, D, G, L 181 Staphylococcus epidermidis EC#: 4.1.1 IUBMB
Mutation: H67N
Gene Name(s): epiD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
LANTIBIOTIC EPIDERMIN M, N, O, P 5 Staphylococcus epidermidis Fragment: C-TERMINUS
Mutation: N401D, C404T
Gene Name(s): epiA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FMN
Query on FMN

A, D, G, L FLAVIN MONONUCLEOTIDE
RIBOFLAVIN MONOPHOSPHATE (Synonym)
C17 H21 N4 O9 P
FVTCRASFADXXNN-SCRDCRAPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TRS
Query on TRS

A, G 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER (Synonym)
C4 H12 N O3
LENZDBCJOHFCAS-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.209
  • Space Group: I 21 3

Unit Cell:

Length (Å) Angle (°)
a = 223.55 α = 90.00
b = 223.55 β = 90.00
c = 223.55 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-02
  • Released Date: 2001-05-02
  • Deposition author(s): Blaesse, M., Kupke, T., Huber, R., Steinbacher, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values