1G5L

CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION

Structural Biology Knowledgebase: 1G5L SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 10
  • Selection Criteria: All Calculated Structures Submitted

Literature

Macromolecules
Sequence Display for 1G5L

Classification: DNA

Total Structure Weight: 9285.61

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*CP*AP*AP*AP*G)-3' A 6 synthetic
5'-D(P*AP*CP*TP*GP*GP*G)-3' B 6 synthetic
5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' C 13 synthetic

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BLB
Query on BLB

C BLEOMYCIN B2
C55 H85 N20 O21 S2
NBLHOLNNKJBEDC-XOGQCRKLSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGA
Query on PGA

A 2-PHOSPHOGLYCOLIC ACID
C2 H5 O6 P
ASCFNMCAHFUBCO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
3CO
Query on 3CO

B COBALT (III) ION
Co
JAWGVVJVYSANRY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEO
Query on PEO

C HYDROGEN PEROXIDE
H2 O2
MHAJPDPJQMAIIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
O
Query on O

B OXYGEN ATOM
O
XLYOFNOQVPJJNP-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10
  • Conformers Submitted: 10
  • Selection Criteria: all calculated structures submitted

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-11-01
  • Released Date: 2001-06-06
  • Deposition author(s): Hoehn, S.T., Junker, H.-D., Bunt, R.C., Turner, C.J., Stubbe, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4