1G5H

CRYSTAL STRUCTURE OF THE ACCESSORY SUBUNIT OF MURINE MITOCHONDRIAL POLYMERASE GAMMA

Structural Biology Knowledgebase: 1G5H SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.183

Literature

Macromolecules
Sequence Display for 1G5H

Classification: DNA BINDING PROTEIN

Total Structure Weight: 205623.80

Macromolecule Entities
Molecule Chains Length Organism Details
MITOCHONDRIAL DNA POLYMERASE ACCESSORY SUBUNIT A, B, C, D 454 Mus musculus EC#: 2.7.7.7 IUBMB
Mutation: M92M, M242M, M409M, M436M, M439M, M440M
Gene Name(s): Polg2 Mtpolb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, C, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.224
  • R-Value Work: 0.183
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 96.62 α = 90.00
b = 133.42 β = 90.00
c = 135.04 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-11-01
  • Released Date: 2001-03-14
  • Deposition author(s): Carrodeguas, J.A., Theis, K., Bogenhagen, D.F., Kisker, C.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update