1G4P

THIAMIN PHOSPHATE SYNTHASE

Structural Biology Knowledgebase: 1G4P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.219

Literature

Macromolecules
Sequence Display for 1G4P

Classification: TRANSFERASE

Total Structure Weight: 49072.10

Macromolecule Entities
Molecule Chains Length Organism Details
THIAMIN PHOSPHATE SYNTHASE A, B 226 Bacillus subtilis EC#: 2.5.1.3 IUBMB
Mutation: S130A
Details: COMPLEXED WITH 4-AMINO-2-TRIFLUOROMETHYL-5-HYDROXYMETHYLPYRIMIDINE PYROPHOSPHATE
Gene Name(s): thiE thiC ywbK BSU38290 ipa-26d
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FQP
Query on FQP

A, B 4-AMINO-2-TRIFLUOROMETHYL-5-HYDROXYMETHYLPYRIMIDINE PYROPHOSPHATE
C6 H8 F3 N3 O7 P2
UKNJCTHTCAKKNG-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.219
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 76.28 α = 90.00
b = 76.28 β = 90.00
c = 139.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-27
  • Released Date: 2001-09-26
  • Deposition author(s): Peapus, D.H., Chiu, H.-J., Campobasso, N., Reddick, J.J., Begley, T.P., Ealick, S.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4