1G35

CRYSTAL STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH INHIBITOR, AHA024

Structural Biology Knowledgebase: 1G35 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1G35

Classification: HYDROLASE

Total Structure Weight: 22272.47

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 PROTEASE A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Gene Name(s): gag-pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AHF
Query on AHF

B 2-[4-(HYDROXY-METHOXY-METHYL)-BENZYL]-7-(4- HYDROXYMETHYL-BENZYL)-1,1-DIOXO-3,6-BIS-PHENOXYMETHYL- 1LAMBDA6-[1,2,7]THIADIAZEPANE-4,5-DIOL
C35 H40 N2 O9 S
XLJNZONSWKENRP-VABIIVNOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AHF Kd: 343 nM (98) BindingDB
Ki: 7.3 - 19 nM (98) BindingDB

Ki: 7.3 nM  BindingMOAD
Ki: 7.3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.230
  • R-Value Work: 0.195
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 58.50 α = 90.00
b = 86.90 β = 90.00
c = 46.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-23
  • Released Date: 2001-06-06
  • Deposition author(s): Lindberg, J., Unge, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4