1G30

THROMBIN INHIBITOR COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 1G30

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 35893.88

Macromolecule Entities
Molecule Chains Length Organism Details
PROTHROMBIN A 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: LIGHT CHAIN
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTHROMBIN B 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Fragment: HEAVY CHAIN
Gene Name(s): F2 Gene View
HIRUDIN IIB C 11 Hirudo medicinalis Fragment: RESIDUES 55-65
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
T87
Query on T87

B [(1-{2[(4-CARBAMIMIDOYL-PHENYLAMINO)-METHYL]- 1-METHYL-1H-BENZOIMIDAZOL-5-YL}-CYCLOPROPYL)- PYRIDIN-2-YL-METHYLENEAMINOOXY]-ACETIC ACID ETHYL ESTER
C29 H31 N7 O3
RNOYCNIZOAIUSV-LSWMGQQCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
T87 Ki: 140 nM (100) BindingDB

Ki: 140 nM  BindingMOAD
Ki: 140 nM  PDBbind
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TYS
Query on TYS
C L-PEPTIDE LINKING C9 H11 N O6 S TYR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.210
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 69.30 α = 90.00
b = 70.90 β = 100.30
c = 72.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-23
  • Released Date: 2001-10-23
  • Deposition author(s): Nar, H.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Structure summary, Version format compliance
  • 2012-12-12
    Type: Other
  • 2013-03-13
    Type: Other