1G1J

CRYSTAL STRUCTURE OF THE OLIGOMERIZATION DOMAIN FROM ROTAVIRUS NSP4

Structural Biology Knowledgebase: 1G1J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.216

Literature

Macromolecules
Sequence Display for 1G1J

Classification: METAL BINDING PROTEIN

Total Structure Weight: 10896.23

Macromolecule Entities
Molecule Chains Length Organism Details
NON-STRUCTURAL GLYCOPROTEIN NSP4 A, B 43 Rotavirus a Fragment: OLIGOMERIZATION DOMAIN
Mutation: M112M
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SR
Query on SR

B STRONTIUM ION
Sr
PWYYWQHXAPXYMF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.239
  • R-Value Work: 0.216
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 34.92 α = 90.00
b = 35.91 β = 90.00
c = 60.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-11
  • Released Date: 2001-01-10
  • Deposition author(s): Bowman, G.D., Nodelman, I.M., Schutt, C.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values