1G13

HUMAN GM2 ACTIVATOR STRUCTURE

Structural Biology Knowledgebase: 1G13 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.215

Literature

Macromolecules
Sequence Display for 1G13

Classification: Ligand Binding Protein

Total Structure Weight: 53332.98

Macromolecule Entities
Molecule Chains Length Organism Details
GANGLIOSIDE M2 ACTIVATOR PROTEIN A, B, C 162 Homo sapiens Fragment: RESIDUES 39-200
Mutation: M38M, M86M
Gene Name(s): GM2A Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.215
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.42 α = 90.00
b = 85.63 β = 90.00
c = 120.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-10
  • Released Date: 2001-04-11
  • Deposition author(s): Wright, C.S., Li, S.C., Rastinejad, F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4