1G05

HETEROCYCLE-BASED MMP INHIBITOR WITH P2'SUBSTITUENTS

Structural Biology Knowledgebase: 1G05 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.243

Literature

Macromolecules
Sequence Display for 1G05

Classification: HYDROLASE

Total Structure Weight: 39754.86

Macromolecule Entities
Molecule Chains Length Organism Details
STROMELYSIN-1 PRECURSOR A, B 173 Homo sapiens EC#: 3.4.24.17 IUBMB
Fragment: CATALYTIC DOMAIN
Gene Name(s): MMP3 Gene View STMY1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BBH
Query on BBH

B 1-BENZYL-3-(4-METHOXY-BENZENESULFONYL)-6- OXO-HEXAHYDRO-PYRIMIDINE-4-CARBOXYLIC ACID HYDROXYAMIDE
C19 H21 N3 O6 S
SUSMVCKSLVPRCL-QGZVFWFLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BBH IC50: 3.1 nM (100) BindingDB

IC50: 3.1 nM  BindingMOAD
IC50: 3.1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.293
  • R-Value Work: 0.243
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 37.85 α = 90.00
b = 78.22 β = 90.00
c = 104.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-10-05
  • Released Date: 2001-10-05
  • Deposition author(s): Pikul, S., Dunham, K.M., Almstead, N.G., De, B., Natchus, M.G., Taiwo, Y.O., Williams, L.E., Hynd, B.A., Hsieh, L.C., Janusz, M.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4