1FZG

CRYSTAL STRUCTURE OF FRAGMENT D FROM HUMAN FIBRINOGEN WITH THE PEPTIDE LIGAND GLY-HIS-ARG-PRO-AMIDE


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.233

Literature

Macromolecules
Sequence Display for 1FZG

Classification: BLOOD COAGULATION

Total Structure Weight: 171396.02

Macromolecule Entities
Molecule Chains Length Organism Details
FIBRINOGEN A, D 87 Homo sapiens Fragment: FRAGMENT DOUBLE-D
Gene Name(s): FGA Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FIBRINOGEN B, E 328 Homo sapiens Fragment: FRAGMENT DOUBLE-D
Gene Name(s): FGB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FIBRINOGEN C, F 319 Homo sapiens Fragment: FRAGMENT DOUBLE-D
Gene Name(s): FGG Gene View PRO2061
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FIBRINOGEN M, N, S, T 4 Homo sapiens Fragment: FRAGMENT DOUBLE-D
Gene Name(s): FGB Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

B, E N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

B, C, E, F CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.233
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 54.80 α = 90.00
b = 149.40 β = 90.00
c = 234.70 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-01-01
  • Released Date: 1999-06-08
  • Deposition author(s): Everse, S.J., Spraggon, G., Veerapandian, L., Doolittle, R.F.

Revision History

  • 2008-03-10
    Type: Version format compliance
  • 2011-07-13
    Type: Non-polymer description, Version format compliance