1FVI

CRYSTAL STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-ADENYLATE

Structural Biology Knowledgebase: 1FVI SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1FVI

Classification: LIGASE

Total Structure Weight: 34567.74

Macromolecule Entities
Molecule Chains Length Organism Details
CHLORELLA VIRUS DNA LIGASE-ADENYLATE A 297 Chlorella virus EC#: 6.5.1 IUBMB
Mutation: D29A
Gene Name(s): C658R AR158_C658R
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

A ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.190
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 48.17 α = 90.00
b = 58.44 β = 90.00
c = 101.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-20
  • Released Date: 2000-11-22
  • Deposition author(s): Odell, M., Sriskanda, V., Shuman, S., Nikolov, D.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4